deciphering Dat summaries
Reported by jtprince | February 10th, 2009 @ 01:35 PM
some notes on deciphering the Dat summary section [work in progress]
XX is probably unknowable (based on not seeing the information in the csv or xml export) ?? is currently unknown So, here is a sample line (hit 14, from query 2 (??)): h14_q2=0,936.455246,0.001202,53,61,4.00,GYASPDLSK,16,00000000000,22.56,1,0002001000000000000,0,0,1671.400000 0=?? 1=Mr(expt) 2=deltamass 3=peptide_start 4=peptide_end 5=XX 6=Peptide (the sequence) 7=?? 8=PeptideScore 9=Rank 10=?? 11=?? 12=?? 13=??
Note that peptide start and end have to be adjusted for Methionines!
Comments and changes to this ticket
-
jtprince February 10th, 2009 @ 01:40 PM
- Assigned user set to “jtprince”
- State changed from “new” to “open”
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Mass Spectrometry Proteomics in Ruby
jtprince