Audit dump broken
Reported by bahuvrihi | January 15th, 2009 @ 06:20 PM
A printout of test_stack_batch_sync_merge show clear errors (and required a hack on the dump even to be printed).
o-[] ""
o-[#<Tracer:0x10b9f68>] "0.0"
|
| o-[] ""
| o-[#<Tracer:0x10b9e8c>] "1.0"
| |
`-`-o-[#<Tracer:0x10b9c84>] ["0.0 2.1", "1.0 2.1"]
o-[] ""
o-[#<Tracer:0x10b9cd4>] "0.1"
|
-o-[#<Tracer:0x10b9c84>] ["0.1 2.1", "1.0 2.1"]
o-[] ""
o-[#<Tracer:0x10b9cac>] "1.1"
|
-o-[#<Tracer:0x10b9c84>] ["0.0 2.1", "1.1 2.1"]
-o-[#<Tracer:0x10b9c84>] ["0.1 2.1", "1.1 2.1"]
Comments and changes to this ticket
-
bahuvrihi February 22nd, 2009 @ 12:03 PM
- Title changed from “Audit dump broken for sync_merge” to “Audit dump broken”
Way broken:
% rap digest PROTEIN --:i fragment -- mgf -- mgf --mz-precision 2 -- dump --1[2,3]s "--4{2,3}a" I[11:43:41] digest PROTEIN to 2 peptides I[11:43:41] fragment PR I[11:43:41] fragment OTEIN # date: 2009-02-22 11:43:41 # audit: # o-[] "PROTEIN" # o-[ms/in_silico/digest] ["PR", "OTEIN"] # | # |-o-[0] "PR" # | o-[ms/mascot/fragment] [[98.06004, 175.1189517], {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1}] # | | # | |-o-[0] [98.06004, 175.1189517] # | | | # | |---o-[1] {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1} # | | | | # | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.060040\n175.118952\nEND IONS\n\n" # | | | # | | |-----o-[0] [98.06004, 175.1189517] # | | | | | | # | | `-------o-[1] {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1} # | | | | | | # | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.06\n175.12\nEND IONS\n\n" # | | | | | # | | | | `---o-[1] "OTEIN" # | | | | | o-[ms/mascot/fragment] [[102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247], {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1}] # | | | | | | # | | | | | |-o-[0] [102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247] # | | | | | | | # | | | | | |---o-[1] {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1} # | | | | | | | | # | | | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.054955\n133.060768\n231.097548\n246.144832\n344.181612\n375.187425\nEND IONS\n\n" # | | | | | | | # | | | | | | |-----o-[0] [102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247] # | | | | | | | | | | # | | | | | | `-------o-[1] {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1} # | | | | | | | | | | # | | | | | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.05\n133.06\n231.10\n246.14\n344.18\n375.19\nEND IONS\n\n" # | | | | | | | | | # | | | | | `---`-`-----`-o-[tap/tasks/dump] ["BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.060040\n175.118952\nEND IONS\n\n", "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.06\n175.12\nEND IONS\n\n", "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.054955\n133.060768\n231.097548\n246.144832\n344.181612\n375.187425\nEND IONS\n\n", "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.05\n133.06\n231.10\n246.14\n344.18\n375.19\nEND IONS\n\n"]
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A framework for making configurable, file-based tasks and workflows.
bahuvrihi