Audit dump broken
Reported by bahuvrihi | January 15th, 2009 @ 06:20 PM
A printout of test_stack_batch_sync_merge show clear errors (and required a hack on the dump even to be printed).
o-[] ""
o-[#<Tracer:0x10b9f68>] "0.0"
|
| o-[] ""
| o-[#<Tracer:0x10b9e8c>] "1.0"
| |
`-`-o-[#<Tracer:0x10b9c84>] ["0.0 2.1", "1.0 2.1"]
o-[] ""
o-[#<Tracer:0x10b9cd4>] "0.1"
|
-o-[#<Tracer:0x10b9c84>] ["0.1 2.1", "1.0 2.1"]
o-[] ""
o-[#<Tracer:0x10b9cac>] "1.1"
|
-o-[#<Tracer:0x10b9c84>] ["0.0 2.1", "1.1 2.1"]
-o-[#<Tracer:0x10b9c84>] ["0.1 2.1", "1.1 2.1"]
Comments and changes to this ticket
-
bahuvrihi February 22nd, 2009 @ 12:03 PM
- Title changed from “Audit dump broken for sync_merge” to “Audit dump broken”
Way broken:
% rap digest PROTEIN --:i fragment -- mgf -- mgf --mz-precision 2 -- dump --1[2,3]s "--4{2,3}a" I[11:43:41] digest PROTEIN to 2 peptides I[11:43:41] fragment PR I[11:43:41] fragment OTEIN # date: 2009-02-22 11:43:41 # audit: # o-[] "PROTEIN" # o-[ms/in_silico/digest] ["PR", "OTEIN"] # | # |-o-[0] "PR" # | o-[ms/mascot/fragment] [[98.06004, 175.1189517], {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1}] # | | # | |-o-[0] [98.06004, 175.1189517] # | | | # | |---o-[1] {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1} # | | | | # | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.060040\n175.118952\nEND IONS\n\n" # | | | # | | |-----o-[0] [98.06004, 175.1189517] # | | | | | | # | | `-------o-[1] {:parent_ion_mass=>272.1717157, :title=>"PR (y, b)", :charge=>1} # | | | | | | # | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.06\n175.12\nEND IONS\n\n" # | | | | | # | | | | `---o-[1] "OTEIN" # | | | | | o-[ms/mascot/fragment] [[102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247], {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1}] # | | | | | | # | | | | | |-o-[0] [102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247] # | | | | | | | # | | | | | |---o-[1] {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1} # | | | | | | | | # | | | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.054955\n133.060768\n231.097548\n246.144832\n344.181612\n375.187425\nEND IONS\n\n" # | | | | | | | # | | | | | | |-----o-[0] [102.054955, 133.0607677, 231.097548, 246.1448317, 344.181612, 375.1874247] # | | | | | | | | | | # | | | | | | `-------o-[1] {:parent_ion_mass=>476.2351037, :title=>"OTEIN (y, b)", :charge=>1} # | | | | | | | | | | # | | | | | | | | `-`-o-[ms/mascot/format/mgf] "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.05\n133.06\n231.10\n246.14\n344.18\n375.19\nEND IONS\n\n" # | | | | | | | | | # | | | | | `---`-`-----`-o-[tap/tasks/dump] ["BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.060040\n175.118952\nEND IONS\n\n", "BEGIN IONS\nTITLE=PR (y, b)\nCHARGE=1+\nPEPMASS=272.171716\n98.06\n175.12\nEND IONS\n\n", "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.054955\n133.060768\n231.097548\n246.144832\n344.181612\n375.187425\nEND IONS\n\n", "BEGIN IONS\nTITLE=OTEIN (y, b)\nCHARGE=1+\nPEPMASS=476.235104\n102.05\n133.06\n231.10\n246.14\n344.18\n375.19\nEND IONS\n\n"]
Please Sign in or create a free account to add a new ticket.
With your very own profile, you can contribute to projects, track your activity, watch tickets, receive and update tickets through your email and much more.
Create new ticket
Create your profile
Help contribute to this project by taking a few moments to create your personal profile. Create your profile »
A framework for making configurable, file-based tasks and workflows.
bahuvrihi