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Activity (RSS)

Wednesday, February 25 2009
development of Protein http://github.... was committed by Simon Chiang at 11:48 PM
minor updates to Peptides http://gith... was committed by Simon Chiang at 11:48 PM
6 Optimize Peptides was created
  • bahuvrihi
    bahuvrihi created the ticket at 11:34 PM

    Parsing of PeptideHit could be optimized to lazily split off the ProteinMap data. This will obviate the need for several splits and casts but will require a tru...
1 Specs are a mess was updated
  • bahuvrihi
    • State changed from open to resolved
    by bahuvrihi at 11:32 PM
changed XTest to XSpec as necessary h... was committed by Simon Chiang at 11:24 PM
developed Peptides section http://git... was committed by Simon Chiang at 11:24 PM
interpretation of peptides section ht... was committed by Simon Chiang at 11:24 PM
fixed query documentation http://gith... was committed by Simon Chiang at 11:24 PM
development of Query http://github.co... was committed by Simon Chiang at 11:24 PM
added backreference to dat http://git... was committed by Simon Chiang at 11:24 PM
added documentation for standard dat... was committed by Simon Chiang at 11:24 PM
Tuesday, February 24 2009
5 Add available series to Ms::InSilico::Fragment was updated
  • bahuvrihi
    bahuvrihi commented at 4:16 PM

    Let me clarify... so you can know which series are available from the command line. This will be implemented when a 'select' option is available from Configurab...
towards peptide hits Signed-off-by: ... was committed by John Prince at 10:13 AM
working towards Summary interface (Pe... was committed by John Prince at 10:13 AM
some documentation to lighthouse Sig... was committed by John Prince at 10:13 AM
fixed failing dat_spec spec: query(nu... was committed by John Prince at 10:13 AM
query has top level Dat access; specs... was committed by John Prince at 10:13 AM
last couple of specs fixed http://git... was committed by John Prince at 10:13 AM
working to get specs passing http://g... was committed by John Prince at 10:13 AM
working to get specs passing http://g... was committed by John Prince at 10:13 AM
working http://github.com/bahuvrihi/m... was committed by John Prince at 10:13 AM
revamped archive and section tests in... was committed by John Prince at 10:13 AM
resolving conflicts in merge with Sim... was committed by John Prince at 10:13 AM
adding submodule http://github.com/ba... was committed by John Prince at 10:13 AM
in progress http://github.com/bahuvri... was committed by John Prince at 10:13 AM
organized Dat spec a little and other... was committed by John Prince at 10:13 AM
implemented workaround for includes w... was committed by John Prince at 10:13 AM
added ms-testdata as a submodule http... was committed by Simon Chiang at 10:13 AM
reworked dat sections as subclasses o... was committed by Simon Chiang at 10:13 AM
renamed Parameters to Section http://... was committed by Simon Chiang at 10:13 AM
added Parameter to parse key=value se... was committed by Simon Chiang at 10:13 AM
testing of Dat::Archive http://github... was committed by Simon Chiang at 10:13 AM
progress http://github.com/bahuvrihi/... was committed by John Prince at 10:13 AM
sketched out dat archive http://githu... was committed by Simon Chiang at 10:13 AM
dat format more fleshed out, hashes f... was committed by John Prince at 10:13 AM
in progress http://github.com/bahuvri... was committed by John Prince at 10:13 AM
dat reader pre-pre-alpha, basic outli... was committed by John Prince at 10:13 AM
progress http://github.com/bahuvrihi/... was committed by John Prince at 10:13 AM
everything moved from test to spec, a... was committed by John Prince at 10:13 AM
progress http://github.com/bahuvrihi/... was committed by John Prince at 10:13 AM
Monday, February 23 2009
updates for release http://github.com... was committed by Simon Chiang at 8:00 PM
development of export http://github.c... was committed by Simon Chiang at 4:24 PM
development and testing of submit htt... was committed by Simon Chiang at 3:49 PM
documentation and update of submit ta... was committed by Simon Chiang at 2:37 PM
documentation of tasks. also made Fr... was committed by Simon Chiang at 2:37 PM
documentation of Fragment task. also... was committed by Simon Chiang at 11:24 AM
5 Add available series to Ms::InSilico::Fragment was created
  • bahuvrihi
    bahuvrihi created the ticket at 10:57 AM

    So that you can know %w{a b c x y z ...}
updates to suppress warnings http://g... was committed by Simon Chiang at 10:46 AM
renamed format/mgf as format_mgf http... was committed by Simon Chiang at 10:46 AM
removed old commands http://github.co... was committed by Simon Chiang at 10:46 AM