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Activity (RSS)

Friday, February 20 2009
fixed spec for format/mgf http://gith... was committed by Simon Chiang at 11:47 PM
sketched out parse http://github.com/... was committed by Simon Chiang at 11:47 PM
minor updates to format/mgf http://gi... was committed by Simon Chiang at 4:32 PM
Wednesday, February 18 2009
4 Parsing mascot spectra was created
  • bahuvrihi
    bahuvrihi created the ticket at 9:31 AM

    Mascot does not do it's parent ion mass calculation in an obvious way, leading to misidentifications I want to look into. In order to do so I plan to use the da...
Tuesday, February 17 2009
sketched out format/mgf task to forma... was committed by Simon Chiang at 10:27 PM
removed predict (no longer necessary)... was committed by Simon Chiang at 10:27 PM
added ms-in_silico as a submodule htt... was committed by Simon Chiang at 10:27 PM
minor cleanup of Rakefile and gemspec... was committed by Simon Chiang at 5:06 PM
fixed predict_spec and modified predi... was committed by Simon Chiang at 5:06 PM
Friday, February 13 2009
3 to cast or not to cast? was updated
  • bahuvrihi
    bahuvrihi commented at 12:04 AM

    It definitely is something to think about.

    My first reaction was 'not to cast' mainly coming from a performance standpoint. Looking at a .dat file, many section...
Thursday, February 12 2009
3 to cast or not to cast? was created
  • jtprince
    jtprince created the ticket at 5:26 PM

    With almost every file format and object, the decision has to be made (and remade) as to whether the data values should be cast, and if so, when?

    For example:

    T...
Wednesday, February 11 2009
1 Specs are a mess was updated
  • bahuvrihi
    bahuvrihi commented at 10:04 AM

    Really good points. Maybe it's a matter of applying a spec/test style to the right problem? I can see how high level behavior is nicely supported by specs that ...
Tuesday, February 10 2009
2 deciphering Dat summaries was updated
  • jtprince
    • Assigned user set to jtprince
    • State changed from new to open
    by jtprince at 1:40 PM
  • jtprince
    jtprince created the ticket at 1:35 PM

    some notes on deciphering the Dat summary section [work in progress]

    XX is probably unknowable (based on not seeing the information in the csv or xml export)
?...
1 Specs are a mess was updated
  • jtprince
    jtprince commented at 1:26 PM

    The solutions proposed are sound. Still, I think as described they reflect more of a unit test style (which is a good thing) but are not as compatible with more...
Saturday, February 07 2009
1 Specs are a mess was updated
  • bahuvrihi
    bahuvrihi commented at 12:07 PM

    I've submitted a ticket to MiniTest to raise a warning when methods get duplicated, so hopefully this won't be an issue in the future.
  • bahuvrihi
    bahuvrihi commented at 11:36 AM

    A downside of this system is that it silently allows duplicate definition of methods:

    
class SampleSpec < MiniTest::Spec
  it "must flunk" { flunk }
  it "m...
  • bahuvrihi
    • State changed from new to open
    • Assigned user set to bahuvrihi
    by bahuvrihi at 10:53 AM

    (from [d866af0862875abc014428dcd8c60832bd6da137]) cleanup of specs, removing spurious includes and reworking descriptions [#1 responsible:bahuvrihi state:open] ...
  • bahuvrihi
    bahuvrihi created the ticket at 10:44 AM

    Specs are currently a mess for a couple reasons.

    • We found out include has issues
    • The descriptions (it ...) are based on old test names and don't make any lite...
reverted changes to Archive.section_n... was committed by Simon Chiang at 11:59 AM
added documentation for Archive::CONT... was committed by Simon Chiang at 11:59 AM
cleanup of specs, removing spurious i... was committed by Simon Chiang at 10:53 AM
updates to use tap-0.12.0 http://gith... was committed by Simon Chiang at 10:49 AM
fixed rdoc dir on rubyforge http://gi... was committed by Simon Chiang at 10:49 AM
Friday, September 12 2008
jtprince jtprince was invited to mspire at 5:16 PM
Monday, September 08 2008
Home was created by bahuvrihi in mspire at 2:36 PM